Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Question: Is it possible to get local blast output directly in Biopython, without mak atape Bioinformatics 1 05-04-2015 12:08 AM
Biopython blast parsing skbrimer Bioinformatics 5 12-11-2014 09:57 AM
Quality Control on Local Machine/Server arcolombo698 RNA Sequencing 3 12-03-2013 03:19 AM
Command Line BLAST for specific genome using TAXID eatashpaz Bioinformatics 2 02-10-2012 11:18 AM
BLAST database error - when changing to new BLAST+ local program biobio Bioinformatics 4 06-15-2011 05:20 AM

Thread Tools
Old 04-19-2018, 03:49 AM   #1
Junior Member
Location: Netherlands

Join Date: Nov 2014
Posts: 8
Question BLAST taxid to complete linage using biopython on a local machine.

Hello all,

Using BLAST, I am trying to identify thousands of sequences. To make my job a bit easier, I would like to classify these sequences first by sorting them on phylum e.g. only keep BLAST hits from a certain pylum. To do this, I need to generate het complete linage of the hit using the NCBI taxonomic database. I know you can query the database with biopython. over the internet, but the machine I am working on has no internet access.

Could anyone give me some insight into this?
sublimetech is offline   Reply With Quote

biopython, blast, parsing, taxonomy

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:52 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO