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Old 04-29-2013, 07:33 AM   #1
pm2012
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Location: DC

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Default Variant caller that retains read ID info

Hi

Are there any variant calling programs that retain read id info and provide it in the output? I use samtools and it seems to only provide the number of reads supporting/not supporting a particular SNP. I am interested to know which reads have or do not have the SNP at any given SNP loci.
I would really appreciate any help.

Thanks
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