I'm encountered with "unmatched read name" error when I converting paired SOLiD csfasta files to fastq by using solid2fastq.pl from bwa-0.5.9
The error message:
================================
** unmatched read name: '>4_26_52_F3
' != '>4_26_52_F3
'
================================
I read there was suggestion to modify the script as mentioned by
1. drio's post in PE SOLiD reads alignment by bwa thread.
2. javijevi's post in bwa samse segmentation fault thread.
I tired the modification and the "unmatched read name" error remained.
Could anyone shares your solution for this?
Thank you very much.
The error message:
================================
** unmatched read name: '>4_26_52_F3
' != '>4_26_52_F3
'
================================
I read there was suggestion to modify the script as mentioned by
1. drio's post in PE SOLiD reads alignment by bwa thread.
2. javijevi's post in bwa samse segmentation fault thread.
I tired the modification and the "unmatched read name" error remained.
Could anyone shares your solution for this?
Thank you very much.
Comment