SHRiMP2 mapping report

[yksikaksi]

        Pairs Matched:                          9,371    (35.4532%)  <--
        ... with QV >= 10:                      2,351    (8.8945%)
        Pairs Dropped:                          0    (0.0000%)
        Total Paired Matches:                   39,484  <--
        Avg Matches/Pair Matched:               4.21
        Duplicate Paired Matches Pruned:        2,680

        Additional Reads Matched Unpaired:      19,589    (37.0555%)  <--
        ... with QV >= 10:                      642    (1.2144%)
        Total Unpaired Matches:                 129,022  <--
        Avg Matches/Unpaired Matched Read:      6.59
        Duplicate Unpaired Matches Pruned:      2,177

The above was the SHRiMP2 paired end mapping report. I'm confuse which one is the right value(pointed with arrow) I should read in order to learn for how many paired end reads as well as the half-paired reads were mapped.

Could you guys kindly please share your experience?

[felix]

The above was the SHRiMP2 paired end mapping report. I'm confuse which one is the right value(pointed with arrow) I should read in order to learn for how many paired end reads as well as the half-paired reads were mapped.

Could you guys kindly please share your experience?

(Total Paired Matches)/(Pairs Matched) = (Avg Matches/Pair Matched)