DESeq

[anil KR]

Hi,

My name is Anil and i am new to DESeq analysis. By using DESeq script i produced MAplot and i extracted all the genes that are differentially regulated. I got around 295 genes.

Now i want to know which genes are up-regulated and down-regulated.

Can anyone help me how to find up-regulated and down-regulated genes.

Thanks in advance!

Anil.

[dpryan]

The data frame output from whichever function you used for the statistical test (nbinomTest or nbinomGLMTest) has a log(fold change) column, the sign of which indicates direction of change.

[anil KR]

Hi dpryan,

Thankyou for the reply! It's useful.


Anil.

[bobsun]

GOOD! Thakns to you!