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Hi,
I have a multiple protein sequence which looks like -
>gnl|TC-DB|198412035 1.A.70.1.3 PREDICTED: hypothetical protein [Ciona intestinalis]
MDQKIVFILLLVVLLVSQATADDGWVRTGLAVARLVVGRRRRRWNEANGLEKLSSDAEETLSAAEMEEVMQKIMDHQ
>gnl|TC-DB|198415263 1.A.70.1.2 PREDICTED: hypothetical protein [Ciona intestinalis]
MDRKIAFAFLFVILQVTTVSAGWGSLLRVETKAILGTLALRRRTWNENKASQQITPEMEEKLDAEMEKLMQQLAEDQQ
>gnl|TC-DB|210060745 2.A.39.3.6 Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family Transporter
MNSTPIEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQ
SAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG
ITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDP
SREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANL
SPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGI
>gnl|TC-DB|58177374 1.A.2.2.2 Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying K+ Channel Kirbac3.1
MTGGMKPPARKPRILNSDGSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARP
GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLM
MRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFL
VLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTLPDGRRALDLGKFHEIAQHHHHHH
>gnl|TC-DB|A0CIB0 1.A.17.3.1 Chromosome undetermined scaffold_19, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00007662001 PE=4 SV=1
MDDQNQPILQEQPKPKQKKPLLNTKMVKKQKMQNKKEENLREILNFYTNQVDARKFLQKMKAVVDSNQQEKKYQDD
NEYNEMQDIYEDYNMGDLVIVFPNPDADGVKNPPITYKEAEKFYDETLAQKNDDVSESQLKKEKEAFLLAFLMLDDYQ
.
.
.
and so on... (almost around 6000 sequences)
I need to do functional annotation of it, how can i do that ?
Best !
Shashank
I have a multiple protein sequence which looks like -
>gnl|TC-DB|198412035 1.A.70.1.3 PREDICTED: hypothetical protein [Ciona intestinalis]
MDQKIVFILLLVVLLVSQATADDGWVRTGLAVARLVVGRRRRRWNEANGLEKLSSDAEETLSAAEMEEVMQKIMDHQ
>gnl|TC-DB|198415263 1.A.70.1.2 PREDICTED: hypothetical protein [Ciona intestinalis]
MDRKIAFAFLFVILQVTTVSAGWGSLLRVETKAILGTLALRRRTWNENKASQQITPEMEEKLDAEMEKLMQQLAEDQQ
>gnl|TC-DB|210060745 2.A.39.3.6 Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family Transporter
MNSTPIEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQ
SAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG
ITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDP
SREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANL
SPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGI
>gnl|TC-DB|58177374 1.A.2.2.2 Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying K+ Channel Kirbac3.1
MTGGMKPPARKPRILNSDGSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARP
GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKPTLM
MRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFL
VLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTLPDGRRALDLGKFHEIAQHHHHHH
>gnl|TC-DB|A0CIB0 1.A.17.3.1 Chromosome undetermined scaffold_19, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00007662001 PE=4 SV=1
MDDQNQPILQEQPKPKQKKPLLNTKMVKKQKMQNKKEENLREILNFYTNQVDARKFLQKMKAVVDSNQQEKKYQDD
NEYNEMQDIYEDYNMGDLVIVFPNPDADGVKNPPITYKEAEKFYDETLAQKNDDVSESQLKKEKEAFLLAFLMLDDYQ
.
.
.
and so on... (almost around 6000 sequences)
I need to do functional annotation of it, how can i do that ?
Best !
Shashank
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