hi,
does someone use samtools calmd to cap base quality as follows?
samtools calmd -Abr input.bam ucsc.hg19.fasta > output_baq.bam
i have tried different bam files and the output bam files are all truncated.
the samtools version is 0.1.18.
does someone encounter the same problem?
thanks in advance
bob
does someone use samtools calmd to cap base quality as follows?
samtools calmd -Abr input.bam ucsc.hg19.fasta > output_baq.bam
i have tried different bam files and the output bam files are all truncated.
the samtools version is 0.1.18.
does someone encounter the same problem?
thanks in advance
bob