hello!
I did four samples RNA-seq experiment, it made me confused when get into differential expressed gene analysis by R package DESeq2.
I can't figure out how dose the log2FoldChange is calculated.
here one example:
geneID basemeanA basemeanB log2FoldChange
c46711_g1 1.99888849285605 17999.4664972886 10.406824704617
not equal to this formula log2(basemeanB/basemeanA) result;
anyhelp is appreciated!
Thanks!
I did four samples RNA-seq experiment, it made me confused when get into differential expressed gene analysis by R package DESeq2.
I can't figure out how dose the log2FoldChange is calculated.
here one example:
geneID basemeanA basemeanB log2FoldChange
c46711_g1 1.99888849285605 17999.4664972886 10.406824704617
not equal to this formula log2(basemeanB/basemeanA) result;
anyhelp is appreciated!
Thanks!
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