Do you know any scaffolding tool targeted to NGS plattaforms? I am looking for something that can use contig fastas and aligned paired ends (eg SAM format) as input.
I know that most assemblers produce scaffolds natively nowadays, but there are some occasions in which an external tool is necessary.
I only know Bambus, but I think it would be a bit difficult to convert aligned paired end data to Bambus.
Any suggestions?
Thank you very much!
I know that most assemblers produce scaffolds natively nowadays, but there are some occasions in which an external tool is necessary.
I only know Bambus, but I think it would be a bit difficult to convert aligned paired end data to Bambus.
Any suggestions?
Thank you very much!