I have 24 indexed samples from a single Miseq run and I want to remove identical reads between different samples i.e. cross-talk or potential lab contamination/carry-over.
I was trying bedtools intersect -f 1 -r to try and report only unique sequences from bed file but I'm not sure this is the right tool for the job.
Thanks in advance!
I was trying bedtools intersect -f 1 -r to try and report only unique sequences from bed file but I'm not sure this is the right tool for the job.
Thanks in advance!
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