docker installation for Guppy basecaller

smoics · 07-09-2019, 01:37 PM

Linux
Ubuntu 18.04
nvidia-docker2 (2.0.3+docker18.09.7-3).
Nvidia driver 410.57
cuda 10.1

error occurs after: $ sudo docker run --runtime=nvidia --rm nvidia/cuda nvidia-smi

docker: Error response from daemon: OCI runtime create failed: container_linux.go:345: starting container process caused "process_linux.go:430: container init caused "process_linux.go:413: running prestart hook 1 caused \"error running hook: exit status 1, stdout: , stderr: exec command: [/usr/bin/nvidia-container-cli --load-kmods configure --ldconfig=@/sbin/ldconfig.real --device=all --compute --utility --require=cuda>=10.1 brand=tesla,driver>=384,driver<385 brand=tesla,driver>=396,driver<397 brand=tesla,driver>=410,driver<411 --pid=13416 /var/lib/docker/overlay2/97549cacbd12a4779f071ecb38487cd52c90c6fcbf99782762e194ac84b273e7/merged]\\\\nnvidia-container-cli: requirement error: unsatisfied condition: brand = tesla\\\\n\""": unknown.

I've been using this tutorial: https://medium.com/@sh.tsang/docker-...4-cb80f17cac65

I am unsure of how to fix this error. I've tried system restart docker. Thanks!

smoics · 07-10-2019, 01:39 PM

Fixed this by clearing some memory. Thanks for reading. Now onto tackling the rest of the install.

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07-09-2019, 01:37 PM	#1
smoics Member Location: US Join Date: Jan 2016 Posts: 14	docker installation for Guppy basecaller Linux Ubuntu 18.04 nvidia-docker2 (2.0.3+docker18.09.7-3). Nvidia driver 410.57 cuda 10.1 error occurs after: $ sudo docker run --runtime=nvidia --rm nvidia/cuda nvidia-smi docker: Error response from daemon: OCI runtime create failed: container_linux.go:345: starting container process caused "process_linux.go:430: container init caused "process_linux.go:413: running prestart hook 1 caused \"error running hook: exit status 1, stdout: , stderr: exec command: [/usr/bin/nvidia-container-cli --load-kmods configure --ldconfig=@/sbin/ldconfig.real --device=all --compute --utility --require=cuda>=10.1 brand=tesla,driver>=384,driver<385 brand=tesla,driver>=396,driver<397 brand=tesla,driver>=410,driver<411 --pid=13416 /var/lib/docker/overlay2/97549cacbd12a4779f071ecb38487cd52c90c6fcbf99782762e194ac84b273e7/merged]\\\\nnvidia-container-cli: requirement error: unsatisfied condition: brand = tesla\\\\n\""": unknown. I've been using this tutorial: https://medium.com/@sh.tsang/docker-...4-cb80f17cac65 I am unsure of how to fix this error. I've tried system restart docker. Thanks!

07-10-2019, 01:39 PM	#2
smoics Member Location: US Join Date: Jan 2016 Posts: 14	Fixed this by clearing some memory. Thanks for reading. Now onto tackling the rest of the install.