Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
noiseq, where to download hg19 gene feature length? slowsmile Bioinformatics 4 01-22-2014 05:43 AM
Download Human Genome fghd Bioinformatics 4 08-02-2013 05:55 PM
Noncoding human genome (hg19) dpolychr Bioinformatics 3 03-07-2013 01:42 PM
where to download hg19? cliff Bioinformatics 9 07-19-2010 08:30 AM
Download promoter sequence db for human genome? ewilbanks Bioinformatics 3 10-27-2009 09:53 AM

Thread Tools
Old 10-11-2017, 02:24 PM   #1
Junior Member
Location: Bay Area

Join Date: Oct 2017
Posts: 1
Default Download human genome (hg19) custom range


I am attempting to download custom coordinates say (chrX:66765028-66765050) from the hg19 human genome reference.

Is there a solid program/script to run from command line to pull a large number of contigs like this? I'm attempting to crate an amplicon library to work on later in my pipeline.

Thank you!
rleenay is offline   Reply With Quote
Old 10-11-2017, 03:57 PM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,657

Multiple options to do this in this Biostars thread.
GenoMax is offline   Reply With Quote

amplicons, cli, human genome

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:03 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO