SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Gviz - adjust track height abisko00 Bioinformatics 10 04-21-2016 05:05 AM
Error in (Gviz) genetrack<-makeGeneRegionTrack(myGene) znasim09 RNA Sequencing 0 09-11-2015 10:49 PM
Gviz problem---too many stacks to draw angel-sakura Bioinformatics 1 01-04-2015 01:20 AM
maybe a Gviz issue??? emolinari Bioinformatics 2 06-24-2013 06:26 AM
R bioconductor: Gviz dependency valei Bioinformatics 1 03-07-2013 11:06 AM

Reply
 
Thread Tools
Old 10-02-2017, 07:05 AM   #1
pederworning
Junior Member
 
Location: Copenhagen, Denmark

Join Date: Feb 2011
Posts: 4
Unhappy Gviz Installation

Hello I am using R 3.2.3 on ubuntu 16.04 LTS and I can't the R package Gviz

I have done the following:

source("https://bioconductor.org/biocLite.R")

biocLite("Gviz")

I think the problem is with biovizBase and when I try to install that I get the following warnings and error messages

biocLite("biovizBase")

Warning: multiple methods tables found for ‘unlist’

Warning: replacing previous import by ‘S4Vectors::unlist’ when loading ‘biovizBase’
Warning: replacing previous import by ‘S4Vectors::unlist’ when loading ‘IRanges’
Error : Functions found when exporting methods from the namespace ‘IRanges’ which are not S4 generic: ‘which.max’, ‘which.min’
ERROR: lazy loading failed for package ‘biovizBase’
* removing ‘/usr/local/lib/R/site-library/biovizBase’

The downloaded source packages are in
‘/tmp/RtmpVEQwqp/downloaded_packages’
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘biovizBase’ had non-zero exit status

What should I do to install Gviz and biovizBase?

Thanks Peder
pederworning is offline   Reply With Quote
Reply

Tags
biovizbase, gviz, rpackage

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:56 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO