I was running
on the file ftp://ftp2.completegenomics.com/YRI_...01_013.tsv.bz2. The output suggests that the reads are single-end. Or are they paired-end?
Output:
Code:
head -20
Output:
Code:
#ASSEMBLY_ID NA19240-L2-200-37-ASM #BATCH_FILE_NUMBER 13 #BATCH_OFFSET 360000000 #FIELD_SIZE 476288 #FORMAT_VERSION 2.0 #GENERATED_AT 2011-Oct-08 20:47:05.612947 #GENERATED_BY exportTools #LANE L01 #LIBRARY GS00700-CLS_G07 #SAMPLE GS00706-DNA_C01 #SLIDE GS27651-FS3 #SOFTWARE_VERSION 2.0.0.26 #TYPE READS >flags reads scores 5 CTCAAAATCCTAAGCCAAAAGAACAAGGCATCACCTGTTTGCAGAATTGTATATCTAGAAAACCCCCCAT 8:9;;+/378788876;<<<;;:;:()/085280.2847856164:99;;9;;8818888497347;979 4 AATTCTCTGCTTCCAGTGTGGCCCACCAAAAGACTTCTTCCTGCAGGCTGACTTCATAACTTCAGACATA 899;;)72)6784766:;<<::98/888988620.377776656&:6:;;08;:888579446,475915 5 ACTTCTCAGTAAAGTAGGGTTTAGTAAAAGGACTTCAGTGCAGGGCGCCACAGTTTAAGCCAAAAAAGAA 9::;668-57778875:<<;;;+;;999693680.358626+3*677;;:<:<:87988878679;;):: 0 AGCAGAGGAGACCTGAATTCATTTCCTACTTTCAATGCTGTGTGTACTTAGACCACCCACTGTTTTTGAG 88:;:83845788776;:<;%<*+)895588880.*7&7840(62(:8;-<68;88888))22/4::9:9 0 GGAGGGGCCAAGGCCGGCAGAGTGCCTCAGGAGTTGAGTTCGAGCGGGCCAACACGGTAAAACCTCTGGT 81:;676787-*)416;8;3;;:;:88188..*0%0827.7130()%&'$-;32864828542567:999