SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
HMMSplicer : new software for finding splice junctions in RNA-Seq data mdimon RNA Sequencing 29 12-11-2012 10:20 AM
Alternative splice or RNA-seq generated error? Louis_Lemire General 1 07-22-2011 02:38 AM
Where is the mRNA-seq reads and KSHV virus or cell line BC3's alternative splice? jiexu Bioinformatics 1 10-12-2010 09:39 AM

Reply
 
Thread Tools
Old 05-08-2013, 08:44 AM   #1
mehtaaditya
Junior Member
 
Location: India

Join Date: Mar 2013
Posts: 9
Default Alternative Splice Transcript finding in RNA Seq Study

Hi Every one
I m new in RNA seq study. I m using Tophat and cufflink pipeline for referenced based RNA seq study and differential gene expression. now i want to extract or get alternative splice transcript how can i get alternative asplice transcript from my output files. i performed Tophat-cufflink-cuffcompare and cuffdiff. but i dont know how can i will get my alternative splice transcript from my output file?? Can anybody suggest me how can i get?? Any suggestions are appreciated. Thank in advance.
mehtaaditya is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:07 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO