Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • OpenGE on Redhat

    Hi

    I am trying to get the openGE binaries working on Redhat enterprise machines. openge fails with the following error:


    Code:
    openge: symbol lookup error: openge: undefined symbol: _ZZN8BamTools12IBamIODevice14SetErrorStringERKSsS2_E9SEPARATOR
    I am using Redhat 6, linux 64-bit.

    Code:
    Linux 2.6.18-238.el5 #1 SMP Sun Dec 19 14:22:44 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
    Is there something I am missing?

  • #2
    We tested the binaries on an EC2 image of RHEL. It works fine there. However, we will take a look at a local installation of RedHat to see if we can reproduce the error as we would like users to be able to get going with the binaries.

    In the worst case, you would have to install zlib, boost, and bamtools; and then compile from source.

    Hopefully by the next release we can supplement the binaries with RPM and DEB packages. Should make install easier.

    Comment


    • #3
      We now have an RPM for OpenGE! Send me a direct PM and ill share it with you. The next release of OpenGE will feature source, binaries, RPM, and DEB.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin


        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified Bases...
        Yesterday, 07:01 AM
      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      37 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      41 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 09:21 AM
      0 responses
      35 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-04-2024, 09:00 AM
      0 responses
      55 views
      0 likes
      Last Post seqadmin  
      Working...
      X