SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
VP of Science and Operations Genohub Industry Jobs! 0 04-28-2017 07:19 PM
a workflow of population genomic operations/analysis jianfeng.mao Bioinformatics 0 12-13-2010 12:11 AM

Reply
 
Thread Tools
Old 11-24-2017, 06:32 PM   #1
__sequence
Member
 
Location: EU

Join Date: Jun 2011
Posts: 13
Default Algebraic operations with genomic occupancy data

Hi all,

What is a proper software to calculate the average between several genomic coverage signals (e.g. several ChIP-seq replicates, with single base-pair resolution)?

Thanks!

Last edited by __sequence; 11-24-2017 at 07:37 PM.
__sequence is offline   Reply With Quote
Old 11-25-2017, 12:02 AM   #2
malcook
Member
 
Location: 66206

Join Date: Sep 2009
Posts: 23
Default

wiggletools - you will probably want your bigwigs to be normalized, possibly as made easy with deepTools

Last edited by malcook; 11-25-2017 at 12:06 AM.
malcook is offline   Reply With Quote
Old 11-25-2017, 04:20 AM   #3
__sequence
Member
 
Location: EU

Join Date: Jun 2011
Posts: 13
Default

Quote:
Originally Posted by malcook View Post
wiggletools - you will probably want your bigwigs to be normalized, possibly as made easy with deepTools
Thank you! Is there also a software that allows to perform such operations with BedGraph files?
__sequence is offline   Reply With Quote
Reply

Tags
chip-seq, coverage, occupancy

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:24 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO