Hi,
is there any tool that can do something like a sliding window SNP density analysis on a vcf file to find genomic regions with a low polymorphism rate? Vcftools can do a consecutive window analysis but this way you miss a region if the window falls only partially into that region.
Best
is there any tool that can do something like a sliding window SNP density analysis on a vcf file to find genomic regions with a low polymorphism rate? Vcftools can do a consecutive window analysis but this way you miss a region if the window falls only partially into that region.
Best