Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    The problem of running soapfusion

    Hi,I have a problem about running soapfusion.
    After running soapfusion short(Alignment).I have alreay got result.out and result.2Seqs.

    But when I ran perl soapfusion.pl(fusion discovery),I don't understand what is the annotation file (.psl) in description of maual.

    I have use NMToTreefam.txt for <ref_Gene.psl> and refGeneTrRegionFinal for <ref_Gene_exon_region.psl>.However,It can't output the result.

    It is because I ran incorrect annotation file in step of fusion discovery?
    Tags: None
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Essential Discoveries and Tools in Epitranscriptomics
    by seqadmin




    The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
    04-22-2024, 07:01 AM
  • seqadmin
    Current Approaches to Protein Sequencing
    by seqadmin


    Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
    04-04-2024, 04:25 PM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
Genetic Variants and Diabetes Risk in Childhood Cancer Survivors by seqadmin
Started by seqadmin, Yesterday, 08:47 AM
0 responses
12 views
0 likes
 Last Post seqadmin
by seqadmin
Yesterday, 08:47 AM  
Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
Started by seqadmin, 04-11-2024, 12:08 PM
0 responses
60 views
0 likes
 Last Post seqadmin
by seqadmin
04-11-2024, 12:08 PM  
Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
Started by seqadmin, 04-10-2024, 10:19 PM
0 responses
59 views
0 likes
 Last Post seqadmin
by seqadmin
04-10-2024, 10:19 PM  
Novel Diagnostic Assay Enhances Ovarian Cancer Detection by seqadmin
Started by seqadmin, 04-10-2024, 09:21 AM
0 responses
54 views
0 likes
 Last Post seqadmin
by seqadmin
04-10-2024, 09:21 AM  
View All
Working...
X