SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
how to convert general fastq to fastq int format? feng Bioinformatics 21 07-03-2014 11:40 PM
For MAQ: Is there a Tool to convert sanger-format fastq file to illumina-fotmat fastq byb121 Bioinformatics 6 12-20-2013 01:26 AM
Convert SOLiD fastq to Illumina fastq samt SOLiD 34 08-23-2012 06:29 AM
Unmatched read name error when converting csfasta to fastq with solid2fastq.pl yksikaksi Bioinformatics 2 11-06-2011 08:18 PM
fastq to csfasta and .qual samt SOLiD 15 10-29-2009 09:11 AM

Reply
 
Thread Tools
Old 10-30-2011, 08:43 AM   #1
yksikaksi
Member
 
Location: Scandinavia

Join Date: Dec 2009
Posts: 20
Unhappy Convert csfasta to fastq

Good day.

I would like to know is there a must to include .qual file while converting the SOLiD .csfasta file format to .fastq file format for BWA alignment? I plan to use solid2fastq.pl to do the task.

Thanks a lot.
yksikaksi is offline   Reply With Quote
Old 10-30-2011, 10:23 AM   #2
nilshomer
Nils Homer
 
nilshomer's Avatar
 
Location: Boston, MA, USA

Join Date: Nov 2008
Posts: 1,285
Default

Yes, the qual file holds the qualities.
nilshomer is offline   Reply With Quote
Old 10-30-2011, 08:36 PM   #3
yksikaksi
Member
 
Location: Scandinavia

Join Date: Dec 2009
Posts: 20
Default

I see. Thanks for the information.
yksikaksi is offline   Reply With Quote
Reply

Tags
bwa, csfasta, fastq, solid, solid2fastq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:31 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO