Hi,
I am looking into filtering bisulfite reads by a minimum conversion rate. Something high like a 95% CpG and non-CpG conversion rate. I've been working with Bismark and really like it.
I know that I get conversion rates in the end results, but I would like to also filter individual reads by conversion rate, either before or after methylation calling / mapping.
Are there any available tools that could do it, or otherwise a suggested way to do this?
Many thanks!
I am looking into filtering bisulfite reads by a minimum conversion rate. Something high like a 95% CpG and non-CpG conversion rate. I've been working with Bismark and really like it.
I know that I get conversion rates in the end results, but I would like to also filter individual reads by conversion rate, either before or after methylation calling / mapping.
Are there any available tools that could do it, or otherwise a suggested way to do this?
Many thanks!
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