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  • BaseCaller program

    it might be trivial but how the barcode file should be created for BaseCaller program invoked on command line?

    I have created a file as follows

    seq1,ACGT,
    seq2,TGCA,ATA

    but I get an err msg

    BarcodeDatasets: Unknown entry in barcode list file: id_str,sequence,adapter

    Moreover, the 1.wells files are in different directory
    sigproc_results/block_X*

    If I specify -i sigproc_results/block_X*

    I get
    Error - Unknown arguments:sigproc_results/block_X0_Y1332
    and the list of all directories matching sigproc_results/block_X*

    As all 1.wells files are not in a single dir, how to specify -i?


    Thanks
    Last edited by carolW; 03-04-2016, 05:35 AM.

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