Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    DESeq

    Hi,

    My name is Anil and i am new to DESeq analysis. By using DESeq script i produced MAplot and i extracted all the genes that are differentially regulated. I got around 295 genes.

    Now i want to know which genes are up-regulated and down-regulated.

    Can anyone help me how to find up-regulated and down-regulated genes.

    Thanks in advance!

    Anil.
    Tags: None
  • #2
    The data frame output from whichever function you used for the statistical test (nbinomTest or nbinomGLMTest) has a log(fold change) column, the sign of which indicates direction of change.

    Comment

    • #3
      Hi dpryan,

      Thankyou for the reply! It's useful.


      Anil.

      Comment

      • #4
        GOOD! Thakns to you!

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • seqadmin
          Recent Advances in Sequencing Analysis Tools
          by seqadmin


          The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
          Today, 07:48 AM
        • seqadmin
          Essential Discoveries and Tools in Epitranscriptomics
          by seqadmin




          The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
          04-22-2024, 07:01 AM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        Enhanced Neoantigen Detection: Introducing NeoHunter by seqadmin
        Started by seqadmin, Today, 07:17 AM
        0 responses
        11 views
        0 likes
        		 Last Post seqadmin
        by seqadmin
        Today, 07:17 AM  
        A Close Examination at Probiotic-Related Bacteremia by seqadmin
        Started by seqadmin, 05-02-2024, 08:06 AM
        0 responses
        19 views
        0 likes
        		 Last Post seqadmin
        by seqadmin
        05-02-2024, 08:06 AM  
        Expanded Genetic Insights into Blood Pressure Regulation by seqadmin
        Started by seqadmin, 04-30-2024, 12:17 PM
        0 responses
        20 views
        0 likes
        		 Last Post seqadmin
        by seqadmin
        04-30-2024, 12:17 PM  
        The Role of Enhancers in Defining Cell Fate by seqadmin
        Started by seqadmin, 04-29-2024, 10:49 AM
        0 responses
        28 views
        0 likes
        		 Last Post seqadmin
        by seqadmin
        04-29-2024, 10:49 AM  
        View All
        Working...
        X