Hi! Sorry if this is a silly question, but when doing a time series comparison in cufflinks how do I specify that I have three replicates for each time point?
I have
-T first, first, first, second, second, second, third, third, third
How do I make sure cuffdiff understands this and calculates the variance accordingly?
Thanks in advance!
Instructs Cuffdiff to analyze the provided samples as a time series, rather than testing for differences between all pairs of samples. Samples should be provided in increasing time order at the command line (e.g first time point SAM, second timepoint SAM, etc.)
-T first, first, first, second, second, second, third, third, third
How do I make sure cuffdiff understands this and calculates the variance accordingly?
Thanks in advance!
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