Hello,
the problem is: I have a dataset consisting of multiple samples with called variations. If a variant is called in sample A, but not in sample B, I want to know if:
a) The sample agrees with the reference at that position
b) The site is not covered/not sufficiently covered
This is not quite trivial to script, and might be not the fastest solution.
Looking up using samtools tview is too tedious.
Is there a way to do that without scripting?
the problem is: I have a dataset consisting of multiple samples with called variations. If a variant is called in sample A, but not in sample B, I want to know if:
a) The sample agrees with the reference at that position
b) The site is not covered/not sufficiently covered
This is not quite trivial to script, and might be not the fastest solution.
Looking up using samtools tview is too tedious.
Is there a way to do that without scripting?
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