Hello all
I ran trinity for RNA Seq data but i am getting the following error.
This is for 100 million reads.. when i did the subset and ran for 5 million and 10 million, this is running fine.. Also anything more than 10 million its giving the above error
Also if not this, what assembler could be my next choice? Abyss or Oases or any other transcriptome assemblers??
I ran trinity for RNA Seq data but i am getting the following error.
Code:
Error, cmd: /apps/trinityrnaseq_r2011-08-20/Inchworm/bin/inchworm --kmers meryl.kmers.min1.fa --run_inchworm -K 25 -L 48 --monitor 1 --DS 2>monitor.out > inchworm.K25.L48.DS.fa died with ret 256 at /share/apps/trinity/Trinity.pl line 571. ** The inchworm process failed. Below is the tail end of the log file: /data//Rnai/transcriptome/assembly/trinity/monitor.out /share/apps/trinityrnaseq_r2011-08-20/Inchworm/bin/inchworm: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /share/apps/trinityrnaseq_r2011-08-20/Inchworm/bin/inchworm) /share/apps/trinityrnaseq_r2011-08-20/Inchworm/bin/inchworm: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /share/apps/trinityrnaseq_r2011-08-20/Inchworm/bin/inchworm)
Also if not this, what assembler could be my next choice? Abyss or Oases or any other transcriptome assemblers??
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