We have been able to successfully produce results for a number of comparisons using DEXSeq. However, one comparison is giving us problems as we continuously receive the following error(s) when attempting to create the HTML output of the analysis:
All the files appear to be generated in the designated path. However, the page: testForDEU.html only presents the Experimental Design table, not the results table.
We have tried FDR = 0.1, 0.05, and 0.01 and received the same results. Not too many other parameters to play around with.
Any ideas on how to overcome this?
Code:
> DEXSeqHTML(ECS_FVBD3012, geneIDs=NULL, FDR=0.01, path="/home/D30B05FVB_12_20120126/FVBD3012DEXSeqReport") Error in plot.new() : figure margins too large In addition: Warning messages: 1: In plotDEXSeq(ecs, geneID = gene, FDR = FDR, lwd = 2, expression = opts[1], : This gene contains more than 42 transcripts annotated, only the first 42 will be plotted
We have tried FDR = 0.1, 0.05, and 0.01 and received the same results. Not too many other parameters to play around with.
Any ideas on how to overcome this?
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