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  • tophat 1.2 multi thread mode error

    Hi all,
    running tophat 1.2 with 8 threads the following errors occur

    srun: error: q44: tasks 0-6: Exited with exit code 1
    And one thread continues running.

    Also it seems like there is a conflict between threads in creating outputdirectory:
    :
    [Wed Jan 26 21:17:51 2011] Preparing output location tophat_04/
    Traceback (most recent call last):
    File "/soft/tophat-1.2.0/tophat", line 2347, in ?
    sys.exit(main())

    OSError: [Errno 17] File exists: '/tophat_04/'
    os.mkdir(output_dir)
    File "/soft/tophat-1.2.0/tophat", line 2230, in main
    sys.exit(main())

    Have anyone got the same problems?
    Last edited by altodor; 01-27-2011, 01:23 AM.

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