Hello
I'm trying to convert GERALD output, export.txt files, to BAM.
I used samtools export2sam.pl to convert export.txt to SAM but when using samtools -bt to convert SAM to BAM, all the chrM are being recognized as '*'.
such as
[sam_read1] reference 'chrM' is recognized as '*'.
Can anyone help on why are chrM's causing issues here?
Thanks in advance
Jay
I'm trying to convert GERALD output, export.txt files, to BAM.
I used samtools export2sam.pl to convert export.txt to SAM but when using samtools -bt to convert SAM to BAM, all the chrM are being recognized as '*'.
such as
[sam_read1] reference 'chrM' is recognized as '*'.
Can anyone help on why are chrM's causing issues here?
Thanks in advance
Jay
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