I have a reference assembly (in fasta format) and vcf file containing a list of specific sites. I'd like to edit the fasta file to change these positions to 'Ns'.
Does anyone have any suggestions for a tool to accomplish this? I also have a trimmed down version of the vcf that just contains chrom# and position...
Thanks in advance for any suggestions!
Does anyone have any suggestions for a tool to accomplish this? I also have a trimmed down version of the vcf that just contains chrom# and position...
Thanks in advance for any suggestions!
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