I was wondering if anyone had any experience with this? I know there is the qiime deploy script, which I'm going to try but I was hoping someone had some experience trying this.
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
The best place to ask about this is the bio-linux mailing list http://nebc.nerc.ac.uk/about-us/mailing-lists Tim Booth is pretty responsive.
Doesn't Qiime come installed as standard on Bio-linux though - so updates would be via apt and the standard package updater rather than the deploy script?
-
Originally posted by Palecomic View PostThe best place to ask about this is the bio-linux mailing list http://nebc.nerc.ac.uk/about-us/mailing-lists Tim Booth is pretty responsive.
Doesn't Qiime come installed as standard on Bio-linux though - so updates would be via apt and the standard package updater rather than the deploy script?
Edit: After updating qiime is still version 1.7, I'm guessing the bio linux people just haven't rolled out the new version yet.Last edited by bob-loblaw; 01-15-2014, 06:18 AM.
Comment
-
Have you tried QIIME-Deploy? https://github.com/qiime/qiime-deploy
Relatively simple way to upgrade/install QIIME on any Linux box.
Comment
-
Originally posted by bstamps View PostHave you tried QIIME-Deploy? https://github.com/qiime/qiime-deploy
Relatively simple way to upgrade/install QIIME on any Linux box.
Comment
-
Do you need QIIME 1.7 still functional? Basically if QIIME was installed by its defaults (~/qiime_software/) it should update any packages inside of this directory, install a qiime-1.8.0-release/ directory, and then activate 1.8. You can check out https://github.com/qiime/qiime-deplo...sions-of-qiime if you want to keep multiple versions of QIIME going for what I'm assuming would be consistency-for-publication reasons, or comparisons.
Comment
-
any updates on this
I'm in exactly the same situation and i was wondering how the experiment went... did you try deploying the Qiime 1.8 version?
How did it work? Did it erase the 1.7 or did they both coexist?
I am very worried about doing this as i would probably need to reinstall if the 1.8 installation failed.
thanks
Andrea
Comment
Latest Articles
Collapse
-
by seqadmin
The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...-
Channel: Articles
04-22-2024, 07:01 AM -
-
by seqadmin
Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...-
Channel: Articles
04-04-2024, 04:25 PM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Today, 11:49 AM
|
0 responses
12 views
0 likes
|
Last Post
by seqadmin
Today, 11:49 AM
|
||
Started by seqadmin, Yesterday, 08:47 AM
|
0 responses
16 views
0 likes
|
Last Post
by seqadmin
Yesterday, 08:47 AM
|
||
Started by seqadmin, 04-11-2024, 12:08 PM
|
0 responses
61 views
0 likes
|
Last Post
by seqadmin
04-11-2024, 12:08 PM
|
||
Started by seqadmin, 04-10-2024, 10:19 PM
|
0 responses
60 views
0 likes
|
Last Post
by seqadmin
04-10-2024, 10:19 PM
|
Comment