Hi everyone,
I'm new to Annovar so I tried to follow the Quick Start-Up Guide for table_annovar program.
Specifically I downloaded hg19 refGene database (perl annotate_variation.pl -buildver hg19 -downdb -webfrom annovar refGene humandb/) and then I used table_annovar.pl for the example data, (table_annovar.pl example/ex1.avinput humandb/ -buildver hg19 -out myanno -remove -protocol refGene -operation g -nastring . -csvout).
Everything worked fine and I got the .csv output file: "Multianno output file is written to myanno.hg19_multianno.csv"
However I cannot open the following output files:
"Output files were written to myanno.refGene.variant_function, myanno.refGene.exonic_variant_function"
and I get back a no such file or directory error.
Any idea what's happening?
I am running Cygwin in Windows 8.1 and I have installed all Perl modules.
I'm new to Annovar so I tried to follow the Quick Start-Up Guide for table_annovar program.
Specifically I downloaded hg19 refGene database (perl annotate_variation.pl -buildver hg19 -downdb -webfrom annovar refGene humandb/) and then I used table_annovar.pl for the example data, (table_annovar.pl example/ex1.avinput humandb/ -buildver hg19 -out myanno -remove -protocol refGene -operation g -nastring . -csvout).
Everything worked fine and I got the .csv output file: "Multianno output file is written to myanno.hg19_multianno.csv"
However I cannot open the following output files:
"Output files were written to myanno.refGene.variant_function, myanno.refGene.exonic_variant_function"
and I get back a no such file or directory error.
Any idea what's happening?
I am running Cygwin in Windows 8.1 and I have installed all Perl modules.
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