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Old 02-10-2020, 02:19 AM   #1
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Default Pfam search using hmmer but only for a specific taxonomy

I am trying to do a de novo assembly using Trinity. Using Transdecoder and blastp/hmmscan search to do annotation (using Uniprot/pfam databases). . But i would like to do a blastp/hmmscan search only for a specific taxonomy, viridiplantae to be more precise (taxid: 33090). I managed to find a Uniprot database for plants only, but my problem is how to find a pfam database specific for plants. Here : there is the taxonomy tab, but when checking the box "find unique.." it returns an error. Thanks in advance
polaxgr is offline   Reply With Quote

annotation, blast, denovo assembly, taxonomy

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