SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
CASAVA 1.7 Install Help aligenie Bioinformatics 29 05-23-2014 02:58 AM
Please help me install tabix LouiseT Bioinformatics 9 02-12-2013 12:04 PM
biom from QIIME to MEGAN Jed C. Bioinformatics 0 01-14-2013 08:46 PM
Editing a Kegg Ortholgy file for metagenomic analysis in Qiime Giorgio C Bioinformatics 0 11-19-2012 11:49 AM
Qiime nguyendofx Bioinformatics 0 11-28-2011 09:47 AM

Reply
 
Thread Tools
Old 02-18-2013, 11:37 AM   #1
naragam
Member
 
Location: Durham, NC

Join Date: Apr 2012
Posts: 21
Default Qiime install

Hi,

As usual I need a quick and dirty and reliable way of getting all the required dependencies for installing Qiime on my Ubuntu PC. Looks like I have everything but libghc installed and it looks like getting libghc for Ubuntu is challenging....at least for me...

So, can anybody out there help me in a hurry?

TiA,

Nash
naragam is offline   Reply With Quote
Old 02-18-2013, 12:07 PM   #2
suryasaha
Member
 
Location: New York

Join Date: Mar 2011
Posts: 27
Default

The dependencies can be a pain. Try out the VirtualBox version if that works for you. Its fine for most small datasets and come pre-packaged.
http://qiime.org/install/virtual_box.html
suryasaha is offline   Reply With Quote
Old 02-18-2013, 12:10 PM   #3
suryasaha
Member
 
Location: New York

Join Date: Mar 2011
Posts: 27
Default

Also look through the QIIME forum if somebody has reported problems with libghc. Maybe this applies to you??
https://groups.google.com/forum/?fro...E/0XvPcQd1hGcJ
suryasaha is offline   Reply With Quote
Old 05-01-2014, 04:26 AM   #4
elizondas
Member
 
Location: oxford

Join Date: Nov 2013
Posts: 14
Default

I am trying to install qiime trough virtual box. Everything seems to go ok, until I enter the command VBOXADDITIONS in order ti run it, and I am asked for a password...In the video tutorial a password in not required.
What I should do?
elizondas is offline   Reply With Quote
Old 05-01-2014, 10:10 AM   #5
suryasaha
Member
 
Location: New York

Join Date: Mar 2011
Posts: 27
Default

The default password for the VM is 'qiime' (without the quotes)
suryasaha is offline   Reply With Quote
Old 05-01-2014, 01:28 PM   #6
clintp
Member
 
Location: Georgia

Join Date: Apr 2013
Posts: 19
Default

has anybody tried the packages from the bio-linux repo? I haven't had a chance to see whether they actually work--if so, installing qiime is as easy as running apt-get
clintp is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:28 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO