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How to count number of mapped paired-end and single-end rna-seq reads repinementer Bioinformatics 8 01-06-2013 05:06 AM

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Old 09-06-2016, 01:57 PM   #1
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Default The number of reads of each sample in single cell RNA-Seq

Has anybody done single cell RNA-Seq especially Cel-Seq before?
How many reads per samples would you recommend? I know standard RNA-Seq could better has ~30M per sample and > 3 samples per condition.
Thank you very much!

Last edited by super0925; 09-06-2016 at 02:17 PM.
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Old 01-17-2017, 07:21 AM   #2
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CEL-Seq should be able to work out with much fewer reads since it heavily focuses on 3' end.
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