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Old 12-01-2009, 09:06 PM   #1
hcpark79
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Location: Seoul , Korea

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Default maq map command...

Hi all.
I have a question for MAQ program. I do mapping a solid data using maq map command following as:
maq map -c aln.cs.map ref.csbfa read.bfq 2 > aln.log

but I wonder what does '2' mean ?

thank you~ ^^
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Old 12-04-2009, 06:17 AM   #2
dawe
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Quote:
Originally Posted by hcpark79 View Post
but I wonder what does '2' mean ?
You should read some bash guide, you may start
here.
BTW, 2 is the standard error file descriptor, the "2>" syntax means you are redirecting the error stream to a specific file (a log file in your case)
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Old 12-05-2009, 05:29 AM   #3
hcpark79
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Thanks.
I think that maybe it has another means .. ^^
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