Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
how to speed up blast+ yaximik Bioinformatics 50 09-27-2015 04:22 AM
CrossMatch Alignment and IUPAC codes lwhitmore Bioinformatics 0 04-11-2014 08:30 AM
how to speed up minimus2 jjjscuedu Bioinformatics 2 04-12-2013 09:47 AM
crossmatch/phrap: improper assembly pag Bioinformatics 12 09-13-2012 08:51 AM
how can i speed up bwa? yujiro Bioinformatics 21 04-20-2011 06:12 PM

Thread Tools
Old 07-14-2014, 10:44 AM   #1
Location: Davis, CA

Join Date: Mar 2009
Posts: 82
Default crossmatch speed?

Hey folks,

Does anyone know if there are parameters that you can set when running cross_match within consed to speed things up? Its taking forever to search through my assembly with 9 contigs (N50 ~1Mb), and using only one core and not much memory. Wondering if there's some way to feed it juice it up and get things moving faster...

ewilbanks is offline   Reply With Quote

consed, crossmatch, cross_match, speed

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:29 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO