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Hi!
Im studying adipose and skeletal muscle tissue atm. As a quick sanity check of Cuffdiff results on isoforms, I want to look at well described isoforms.
What I mean is to look at i.e. two isoforms the occur in a fixed ratio within the tissue. And then to see if the RNAseq results also quantifies the same ratio.
Does anyone know of such examples for skeletal muscle/adipose tissue, or have other sanity check methods (both dry- and wet-lab based).
Thank you!
Im studying adipose and skeletal muscle tissue atm. As a quick sanity check of Cuffdiff results on isoforms, I want to look at well described isoforms.
What I mean is to look at i.e. two isoforms the occur in a fixed ratio within the tissue. And then to see if the RNAseq results also quantifies the same ratio.
Does anyone know of such examples for skeletal muscle/adipose tissue, or have other sanity check methods (both dry- and wet-lab based).
Thank you!