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Old 06-30-2019, 03:35 PM   #1
yueli
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Location: china

Join Date: May 2013
Posts: 66
Default makeBigWig.pl

Hello, I

I tried to use makeBigWig.pl

Acutally, bedGraphToBigWig has installed.

Thanks for any help!

Yue


administrator@ACB-HuangLab-Ubuntu:~/homer_01/bin$ perl makeBigWig.pl PU.1-ChIP-Seq/ mm9 -webDir /var/www/bigWigs/ -url http://ChuckNorrisU.edu/bigWigs

!!! Could not detect bedGraphToBigWig program in the executable path !!!
Download it from http://hgdownload.cse.ucsc.edu/admin/exe/

administrator@ACB-HuangLab-Ubuntu:~/homer_01/bin$ ./bedGraphToBigWig
bedGraphToBigWig v 4 - Convert a bedGraph file to bigWig format.
usage:
bedGraphToBigWig in.bedGraph chrom.sizes out.bw
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Old 07-01-2019, 03:52 AM   #2
colindaven
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Default

The error says it all "could not find bedGraphToBigWig".

Have a read about Linux and PATH and and or install/configure this program properly in your PATH.

Else try deeptools via bioconda, it's likely to work better.
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Old 07-01-2019, 04:48 PM   #3
yueli
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Hello, Colindaven,

Thank you so much for your great help!

Best,

Yue
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