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Old 03-12-2019, 06:42 AM   #1
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Default Novaseq paired end data Trimming and clipping

I have 6 couples of paired end libraries (rnaseq) from Novaseq 6000.
It is the first time I work with this kind of data; I read the header of my fastq and they have a double index.
What software can I use to trimming adapters?
Can I use trimmomatic and what adapters reference file I have to use?
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Old 03-12-2019, 07:08 AM   #2
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Cross-posted on Biostars, see my answer there:
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