Hello everyone!
I am using BWA & GATK to analyze Exome Seq data.
My question is: since BWA already take the quality scores into consideratin, will the triming of the low quality ends improve the final snp calling results?
Thanks!
I am using BWA & GATK to analyze Exome Seq data.
My question is: since BWA already take the quality scores into consideratin, will the triming of the low quality ends improve the final snp calling results?
Thanks!