Assembling a genome de novo. I have:
10X coverage with PAC-BIO reads
100X coverage with Illumina short reads (150 bp paired-end reads)
20X coverage with long MiSeq reads (max length 800 bp)
Given what I have to work with, what would be the best strategy to assemble the genome and why?
Thank you,
Joe
10X coverage with PAC-BIO reads
100X coverage with Illumina short reads (150 bp paired-end reads)
20X coverage with long MiSeq reads (max length 800 bp)
Given what I have to work with, what would be the best strategy to assemble the genome and why?
Thank you,
Joe
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