Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
incredible high memory consumption of bwa-mem on small amplicon dataset LarsB Bioinformatics 3 03-08-2017 06:14 AM
Yet Another bwa mem unique post trotos Bioinformatics 0 07-17-2015 07:06 AM
BWA-MEM and X0/X1/etc flags mturchin20 Bioinformatics 5 07-15-2015 07:54 AM
nothing aligned using bwa mem demienx Bioinformatics 5 12-18-2014 12:51 AM
BWA -mem FrankiB RNA Sequencing 2 02-07-2014 09:31 AM

Thread Tools
Old 09-26-2017, 05:35 AM   #1
Junior Member
Location: Russia

Join Date: Sep 2017
Posts: 1
Default Memory efficient MEM-finding with supporting unique MEM

Hello, everyone.

There are several tools (based on MUMmer) for finding MEM (Maximal Exact Matches) with RAM usage optimization (sparseMEM, slaMEM, essaMEM, E-MEM, backwardMEM), but I can't find the appropriate software with supporting memory usage optimization and unique MEM finding simultaneously. Or no memory optimization (MUMmer), or no unique MEM finding (E-MEM), or no support memory reducing in unique-MEM mode (essaMEM).

Can anyone recommended software with required functionality or I have to write the interpretation script for finding maximal unique MEM around all founded MEMs ?
evfratov is offline   Reply With Quote

mem, memory, ngs

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:55 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO