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Old 09-26-2017, 05:35 AM   #1
evfratov
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Location: Russia

Join Date: Sep 2017
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Default Memory efficient MEM-finding with supporting unique MEM

Hello, everyone.

There are several tools (based on MUMmer) for finding MEM (Maximal Exact Matches) with RAM usage optimization (sparseMEM, slaMEM, essaMEM, E-MEM, backwardMEM), but I can't find the appropriate software with supporting memory usage optimization and unique MEM finding simultaneously. Or no memory optimization (MUMmer), or no unique MEM finding (E-MEM), or no support memory reducing in unique-MEM mode (essaMEM).

Can anyone recommended software with required functionality or I have to write the interpretation script for finding maximal unique MEM around all founded MEMs ?
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