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  • How does MEME-ChIP selects the training set?

    For example, each of the "motif location" sections only shows the motif occurrences in 50 peaks. I searched online and read its manual but couldn't find what MEME-ChIP does. Does it show motif occurrences in 50 out of the "training set"?
    Thanks.
    Last edited by metheuse; 10-24-2013, 06:06 AM.

  • #2
    Here is a post from the MEME-ChIP QA that appears to address the first part of your question: link

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    • #3
      Originally posted by GenoMax View Post
      Here is a post from the MEME-ChIP QA that appears to address the first part of your question: link
      Thanks! So MEME only samples 600 peaks out of my input sequences. It's odd that neither its website or manual says anything for this.

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