Hello,
I have Illumina pair-end reads of two species. Major objective is to identify SNP among both the species. I did the de novo assembly of species 1 and 2 using ABYSS, then compared the two species using LASTZ and uploaded it into GBrowse. However, I would now like to identify SNP's between the two species. Is there an accurate way to find de novo SNP's between the two species? I would really appreciate your help.
Thank you,
-Milo
I have Illumina pair-end reads of two species. Major objective is to identify SNP among both the species. I did the de novo assembly of species 1 and 2 using ABYSS, then compared the two species using LASTZ and uploaded it into GBrowse. However, I would now like to identify SNP's between the two species. Is there an accurate way to find de novo SNP's between the two species? I would really appreciate your help.
Thank you,
-Milo