Hi all, I´m newbie in RNA-seq so I hope someone can help
I need to use the information from two RNA-seq data from ENCODE but there are several file types that I can use:
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200ExonsGencV3cRep1V3
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneDeNovoRep1V3
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200JunctionsRep1V3
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2
exons, genedenovo, junctions, splices... which file is more recommended? I guess all are important for different things, but I just want to take a general look
I also have this one:
GSM765388_hg19_wgEncodeCshlLongRnaSeqMcf7CellPapExonsDeNovo
GSM765388_hg19_wgEncodeCshlLongRnaSeqMcf7CellPapTranscriptDeNovoV2
GSM765388_hg19_wgEncodeCshlLongRnaSeqMcf7CellPapGeneDeNovoV2
MCF-7_WholeCell_Ap_Long_CSHL_Contig.CSHL_LID8686-015WC-b1.LID8687-016WC-b2
Can anyone give a bit of light in this path?
Thanks in advance!
I need to use the information from two RNA-seq data from ENCODE but there are several file types that I can use:
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200ExonsGencV3cRep1V3
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200GeneDeNovoRep1V3
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200JunctionsRep1V3
GSM958745_hg19_wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2
exons, genedenovo, junctions, splices... which file is more recommended? I guess all are important for different things, but I just want to take a general look
I also have this one:
GSM765388_hg19_wgEncodeCshlLongRnaSeqMcf7CellPapExonsDeNovo
GSM765388_hg19_wgEncodeCshlLongRnaSeqMcf7CellPapTranscriptDeNovoV2
GSM765388_hg19_wgEncodeCshlLongRnaSeqMcf7CellPapGeneDeNovoV2
MCF-7_WholeCell_Ap_Long_CSHL_Contig.CSHL_LID8686-015WC-b1.LID8687-016WC-b2
Can anyone give a bit of light in this path?
Thanks in advance!