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  • #16
    Hi again,

    I got this,


    echo $PATH
    /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin
    echo $LD_LIBRARY_PATH

    type mpiexec
    mpiexec is /usr/bin/mpiexec

    type mpicxx
    mpicxx is /usr/bin/mpicxx

    type ompi_info
    ompi_info is /usr/bin/ompi_info

    find /usr/local|grep mpi
    /usr/local/bin/mpic++
    /usr/local/bin/mpic++-vt
    /usr/local/bin/mpicc
    /usr/local/bin/mpicc-vt
    /usr/local/bin/mpicxx
    /usr/local/bin/mpicxx-vt
    /usr/local/bin/mpiexec
    /usr/local/bin/mpif77
    /usr/local/bin/mpif77-vt
    /usr/local/bin/mpif90
    /usr/local/bin/mpif90-vt
    /usr/local/bin/mpirun
    /usr/local/bin/ompi-clean
    /usr/local/bin/ompi-iof
    /usr/local/bin/ompi-probe
    /usr/local/bin/ompi-profiler
    /usr/local/bin/ompi-ps
    /usr/local/bin/ompi-server
    /usr/local/bin/ompi-top
    /usr/local/bin/ompi_info
    /usr/local/bin/otfmerge-mpi
    /usr/local/bin/otfprofile-mpi
    /usr/local/bin/vtfilter-mpi
    /usr/local/bin/vtfiltergen-mpi
    /usr/local/bin/vtunify-mpi
    /usr/local/etc/openmpi-default-hostfile
    /usr/local/etc/openmpi-mca-params.conf
    /usr/local/etc/openmpi-totalview.tcl
    /usr/local/include/c++/4.6.0/bits/regex_compiler.h
    /usr/local/include/c++/4.6.0/parallel/compiletime_settings.h
    /usr/local/include/mpi-ext.h
    /usr/local/include/mpi.h
    /usr/local/include/mpi_portable_platform.h
    /usr/local/include/mpif-common.h
    /usr/local/include/mpif-config.h
    /usr/local/include/mpif-mpi-io.h
    /usr/local/include/mpif.h
    /usr/local/include/openmpi
    /usr/local/include/openmpi/ompi
    /usr/local/include/openmpi/ompi/mpi
    /usr/local/include/openmpi/ompi/mpi/cxx
    /usr/local/include/openmpi/ompi/mpi/cxx/comm.h
    /usr/local/include/openmpi/ompi/mpi/cxx/comm_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/constants.h
    /usr/local/include/openmpi/ompi/mpi/cxx/datatype.h
    /usr/local/include/openmpi/ompi/mpi/cxx/datatype_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/errhandler.h
    /usr/local/include/openmpi/ompi/mpi/cxx/errhandler_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/exception.h
    /usr/local/include/openmpi/ompi/mpi/cxx/file.h
    /usr/local/include/openmpi/ompi/mpi/cxx/file_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/functions.h
    /usr/local/include/openmpi/ompi/mpi/cxx/functions_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/group.h
    /usr/local/include/openmpi/ompi/mpi/cxx/group_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/info.h
    /usr/local/include/openmpi/ompi/mpi/cxx/info_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intercomm.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intercomm_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intracomm.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intracomm_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/mpicxx.h
    /usr/local/include/openmpi/ompi/mpi/cxx/op.h
    /usr/local/include/openmpi/ompi/mpi/cxx/op_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/request.h
    /usr/local/include/openmpi/ompi/mpi/cxx/request_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/status.h
    /usr/local/include/openmpi/ompi/mpi/cxx/status_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/topology.h
    /usr/local/include/openmpi/ompi/mpi/cxx/topology_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/win.h
    /usr/local/include/openmpi/ompi/mpi/cxx/win_inln.h
    /usr/local/include/vampirtrace
    /usr/local/include/vampirtrace/opari_omp.h
    /usr/local/include/vampirtrace/otf.h
    /usr/local/include/vampirtrace/OTF_CopyHandler.h
    /usr/local/include/vampirtrace/OTF_CopyHandler_stream.h
    /usr/local/include/vampirtrace/OTF_Definitions.h
    /usr/local/include/vampirtrace/OTF_Errno.h
    /usr/local/include/vampirtrace/OTF_File.h
    /usr/local/include/vampirtrace/OTF_FileManager.h
    /usr/local/include/vampirtrace/OTF_Filenames.h
    /usr/local/include/vampirtrace/OTF_HandlerArray.h
    /usr/local/include/vampirtrace/OTF_inttypes.h
    /usr/local/include/vampirtrace/OTF_inttypes_unix.h
    /usr/local/include/vampirtrace/OTF_KeyValue.h
    /usr/local/include/vampirtrace/OTF_MasterControl.h
    /usr/local/include/vampirtrace/OTF_RBuffer.h
    /usr/local/include/vampirtrace/OTF_Reader.h
    /usr/local/include/vampirtrace/OTF_RStream.h
    /usr/local/include/vampirtrace/OTF_Version.h
    /usr/local/include/vampirtrace/OTF_WBuffer.h
    /usr/local/include/vampirtrace/OTF_Writer.h
    /usr/local/include/vampirtrace/OTF_WStream.h
    /usr/local/include/vampirtrace/otfaux.h
    /usr/local/include/vampirtrace/OTFAUX_MsgMatching.h
    /usr/local/include/vampirtrace/OTFAUX_Thumbnail.h
    /usr/local/include/vampirtrace/pomp_lib.h
    /usr/local/include/vampirtrace/vt_inttypes.h
    /usr/local/include/vampirtrace/vt_plugin_cntr.h
    /usr/local/include/vampirtrace/vt_user.h
    /usr/local/include/vampirtrace/vt_user.inc
    /usr/local/include/vampirtrace/vt_user_comment.h
    /usr/local/include/vampirtrace/vt_user_comment.inc
    /usr/local/include/vampirtrace/vt_user_control.h
    /usr/local/include/vampirtrace/vt_user_control.inc
    /usr/local/include/vampirtrace/vt_user_count.h
    /usr/local/include/vampirtrace/vt_user_count.inc
    /usr/local/include/vampirtrace/vt_user_marker.h
    /usr/local/include/vampirtrace/vt_user_marker.inc
    /usr/local/include/vampirtrace/vt_user_message.h
    /usr/local/include/vampirtrace/vt_user_message.inc
    /usr/local/include/vampirtrace/vt_user_region.h
    /usr/local/include/vampirtrace/vt_user_region.inc
    /usr/local/include/vampirtrace/vt_wrap_pthread.h
    /usr/local/lib/libmpi.1.dylib
    /usr/local/lib/libmpi.dylib
    /usr/local/lib/libmpi.la
    /usr/local/lib/libmpi_cxx.1.dylib
    /usr/local/lib/libmpi_cxx.dylib
    /usr/local/lib/libmpi_cxx.la
    /usr/local/lib/libmpi_f77.1.dylib
    /usr/local/lib/libmpi_f77.dylib
    /usr/local/lib/libmpi_f77.la
    /usr/local/lib/libmpi_f90.a
    /usr/local/lib/libmpi_f90.la
    /usr/local/lib/libompitrace.0.dylib
    /usr/local/lib/libompitrace.dylib
    /usr/local/lib/libompitrace.la
    /usr/local/lib/libvt-mpi-unify.0.dylib
    /usr/local/lib/libvt-mpi-unify.a
    /usr/local/lib/libvt-mpi-unify.dylib
    /usr/local/lib/libvt-mpi-unify.la
    /usr/local/lib/libvt-mpi.0.dylib
    /usr/local/lib/libvt-mpi.a
    /usr/local/lib/libvt-mpi.dylib
    /usr/local/lib/libvt-mpi.la
    /usr/local/lib/mpi.mod
    /usr/local/lib/openmpi
    /usr/local/lib/openmpi/libompi_dbg_msgq.la
    /usr/local/lib/openmpi/libompi_dbg_msgq.so
    /usr/local/lib/openmpi/mca_allocator_basic.la
    /usr/local/lib/openmpi/mca_allocator_basic.so
    /usr/local/lib/openmpi/mca_allocator_bucket.la
    /usr/local/lib/openmpi/mca_allocator_bucket.so
    /usr/local/lib/openmpi/mca_bml_r2.la
    /usr/local/lib/openmpi/mca_bml_r2.so
    /usr/local/lib/openmpi/mca_btl_self.la
    /usr/local/lib/openmpi/mca_btl_self.so
    /usr/local/lib/openmpi/mca_btl_sm.la
    /usr/local/lib/openmpi/mca_btl_sm.so
    /usr/local/lib/openmpi/mca_btl_tcp.la
    /usr/local/lib/openmpi/mca_btl_tcp.so
    /usr/local/lib/openmpi/mca_carto_auto_detect.la
    /usr/local/lib/openmpi/mca_carto_auto_detect.so
    /usr/local/lib/openmpi/mca_carto_file.la
    /usr/local/lib/openmpi/mca_carto_file.so
    /usr/local/lib/openmpi/mca_coll_basic.la
    /usr/local/lib/openmpi/mca_coll_basic.so
    /usr/local/lib/openmpi/mca_coll_hierarch.la
    /usr/local/lib/openmpi/mca_coll_hierarch.so
    /usr/local/lib/openmpi/mca_coll_inter.la
    /usr/local/lib/openmpi/mca_coll_inter.so
    /usr/local/lib/openmpi/mca_coll_self.la
    /usr/local/lib/openmpi/mca_coll_self.so
    /usr/local/lib/openmpi/mca_coll_sm.la
    /usr/local/lib/openmpi/mca_coll_sm.so
    /usr/local/lib/openmpi/mca_coll_sync.la
    /usr/local/lib/openmpi/mca_coll_sync.so
    /usr/local/lib/openmpi/mca_coll_tuned.la
    /usr/local/lib/openmpi/mca_coll_tuned.so
    /usr/local/lib/openmpi/mca_crs_none.la
    /usr/local/lib/openmpi/mca_crs_none.so
    /usr/local/lib/openmpi/mca_dpm_orte.la
    /usr/local/lib/openmpi/mca_dpm_orte.so
    /usr/local/lib/openmpi/mca_errmgr_default.la
    /usr/local/lib/openmpi/mca_errmgr_default.so
    /usr/local/lib/openmpi/mca_ess_env.la
    /usr/local/lib/openmpi/mca_ess_env.so
    /usr/local/lib/openmpi/mca_ess_hnp.la
    /usr/local/lib/openmpi/mca_ess_hnp.so
    /usr/local/lib/openmpi/mca_ess_singleton.la
    /usr/local/lib/openmpi/mca_ess_singleton.so
    /usr/local/lib/openmpi/mca_ess_slave.la
    /usr/local/lib/openmpi/mca_ess_slave.so
    /usr/local/lib/openmpi/mca_ess_slurm.la
    /usr/local/lib/openmpi/mca_ess_slurm.so
    /usr/local/lib/openmpi/mca_ess_slurmd.la
    /usr/local/lib/openmpi/mca_ess_slurmd.so
    /usr/local/lib/openmpi/mca_ess_tool.la
    /usr/local/lib/openmpi/mca_ess_tool.so
    /usr/local/lib/openmpi/mca_filem_rsh.la
    /usr/local/lib/openmpi/mca_filem_rsh.so
    /usr/local/lib/openmpi/mca_grpcomm_bad.la
    /usr/local/lib/openmpi/mca_grpcomm_bad.so
    /usr/local/lib/openmpi/mca_grpcomm_basic.la
    /usr/local/lib/openmpi/mca_grpcomm_basic.so
    /usr/local/lib/openmpi/mca_grpcomm_hier.la
    /usr/local/lib/openmpi/mca_grpcomm_hier.so
    /usr/local/lib/openmpi/mca_io_romio.la
    /usr/local/lib/openmpi/mca_io_romio.so
    /usr/local/lib/openmpi/mca_iof_hnp.la
    /usr/local/lib/openmpi/mca_iof_hnp.so
    /usr/local/lib/openmpi/mca_iof_orted.la
    /usr/local/lib/openmpi/mca_iof_orted.so
    /usr/local/lib/openmpi/mca_iof_tool.la
    /usr/local/lib/openmpi/mca_iof_tool.so
    /usr/local/lib/openmpi/mca_maffinity_first_use.la
    /usr/local/lib/openmpi/mca_maffinity_first_use.so
    /usr/local/lib/openmpi/mca_maffinity_hwloc.la
    /usr/local/lib/openmpi/mca_maffinity_hwloc.so
    /usr/local/lib/openmpi/mca_mpool_fake.la
    /usr/local/lib/openmpi/mca_mpool_fake.so
    /usr/local/lib/openmpi/mca_mpool_rdma.la
    /usr/local/lib/openmpi/mca_mpool_rdma.so
    /usr/local/lib/openmpi/mca_mpool_sm.la
    /usr/local/lib/openmpi/mca_mpool_sm.so
    /usr/local/lib/openmpi/mca_notifier_command.la
    /usr/local/lib/openmpi/mca_notifier_command.so
    /usr/local/lib/openmpi/mca_notifier_syslog.la
    /usr/local/lib/openmpi/mca_notifier_syslog.so
    /usr/local/lib/openmpi/mca_odls_default.la
    /usr/local/lib/openmpi/mca_odls_default.so
    /usr/local/lib/openmpi/mca_oob_tcp.la
    /usr/local/lib/openmpi/mca_oob_tcp.so
    /usr/local/lib/openmpi/mca_osc_pt2pt.la
    /usr/local/lib/openmpi/mca_osc_pt2pt.so
    /usr/local/lib/openmpi/mca_osc_rdma.la
    /usr/local/lib/openmpi/mca_osc_rdma.so
    /usr/local/lib/openmpi/mca_paffinity_hwloc.la
    /usr/local/lib/openmpi/mca_paffinity_hwloc.so
    /usr/local/lib/openmpi/mca_plm_rsh.la
    /usr/local/lib/openmpi/mca_plm_rsh.so
    /usr/local/lib/openmpi/mca_plm_slurm.la
    /usr/local/lib/openmpi/mca_plm_slurm.so
    /usr/local/lib/openmpi/mca_pml_bfo.la
    /usr/local/lib/openmpi/mca_pml_bfo.so
    /usr/local/lib/openmpi/mca_pml_cm.la
    /usr/local/lib/openmpi/mca_pml_cm.so
    /usr/local/lib/openmpi/mca_pml_csum.la
    /usr/local/lib/openmpi/mca_pml_csum.so
    /usr/local/lib/openmpi/mca_pml_ob1.la
    /usr/local/lib/openmpi/mca_pml_ob1.so
    /usr/local/lib/openmpi/mca_pml_v.la
    /usr/local/lib/openmpi/mca_pml_v.so
    /usr/local/lib/openmpi/mca_pstat_darwin.la
    /usr/local/lib/openmpi/mca_pstat_darwin.so
    /usr/local/lib/openmpi/mca_pubsub_orte.la
    /usr/local/lib/openmpi/mca_pubsub_orte.so
    /usr/local/lib/openmpi/mca_ras_cm.la
    /usr/local/lib/openmpi/mca_ras_cm.so
    /usr/local/lib/openmpi/mca_ras_slurm.la
    /usr/local/lib/openmpi/mca_ras_slurm.so
    /usr/local/lib/openmpi/mca_rcache_vma.la
    /usr/local/lib/openmpi/mca_rcache_vma.so
    /usr/local/lib/openmpi/mca_rmaps_load_balance.la
    /usr/local/lib/openmpi/mca_rmaps_load_balance.so
    /usr/local/lib/openmpi/mca_rmaps_rank_file.la
    /usr/local/lib/openmpi/mca_rmaps_rank_file.so
    /usr/local/lib/openmpi/mca_rmaps_resilient.la
    /usr/local/lib/openmpi/mca_rmaps_resilient.so
    /usr/local/lib/openmpi/mca_rmaps_round_robin.la
    /usr/local/lib/openmpi/mca_rmaps_round_robin.so
    /usr/local/lib/openmpi/mca_rmaps_seq.la
    /usr/local/lib/openmpi/mca_rmaps_seq.so
    /usr/local/lib/openmpi/mca_rmaps_topo.la
    /usr/local/lib/openmpi/mca_rmaps_topo.so
    /usr/local/lib/openmpi/mca_rmcast_tcp.la
    /usr/local/lib/openmpi/mca_rmcast_tcp.so
    /usr/local/lib/openmpi/mca_rmcast_udp.la
    /usr/local/lib/openmpi/mca_rmcast_udp.so
    /usr/local/lib/openmpi/mca_rml_oob.la
    /usr/local/lib/openmpi/mca_rml_oob.so
    /usr/local/lib/openmpi/mca_routed_binomial.la
    /usr/local/lib/openmpi/mca_routed_binomial.so
    /usr/local/lib/openmpi/mca_routed_cm.la
    /usr/local/lib/openmpi/mca_routed_cm.so
    /usr/local/lib/openmpi/mca_routed_direct.la
    /usr/local/lib/openmpi/mca_routed_direct.so
    /usr/local/lib/openmpi/mca_routed_linear.la
    /usr/local/lib/openmpi/mca_routed_linear.so
    /usr/local/lib/openmpi/mca_routed_radix.la
    /usr/local/lib/openmpi/mca_routed_radix.so
    /usr/local/lib/openmpi/mca_routed_slave.la
    /usr/local/lib/openmpi/mca_routed_slave.so
    /usr/local/lib/openmpi/mca_shmem_mmap.la
    /usr/local/lib/openmpi/mca_shmem_mmap.so
    /usr/local/lib/openmpi/mca_shmem_posix.la
    /usr/local/lib/openmpi/mca_shmem_posix.so
    /usr/local/lib/openmpi/mca_shmem_sysv.la
    /usr/local/lib/openmpi/mca_shmem_sysv.so
    /usr/local/lib/openmpi/mca_sysinfo_darwin.la
    /usr/local/lib/openmpi/mca_sysinfo_darwin.so
    /usr/local/lib/openmpi/mca_topo_unity.la
    /usr/local/lib/openmpi/mca_topo_unity.so
    /usr/local/lib/openmpi/mca_vprotocol_pessimist.la
    /usr/local/lib/openmpi/mca_vprotocol_pessimist.so
    /usr/local/lib/pkgconfig/ompi-c.pc
    /usr/local/lib/pkgconfig/ompi-cxx.pc
    /usr/local/lib/pkgconfig/ompi-f77.pc
    /usr/local/lib/pkgconfig/ompi-f90.pc
    /usr/local/lib/pkgconfig/ompi.pc
    find: /usr/local/mysql-5.5.22-osx10.6-x86/data/performance_schema: Permission denied
    /usr/local/mysql-5.5.22-osx10.6-x86/include/my_compiler.h
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/r/version_compile_machine_basic.result
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/r/version_compile_os_basic.result
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/t/version_compile_machine_basic.test
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/t/version_compile_os_basic.test
    /usr/local/share/man/man1/mpic++.1
    /usr/local/share/man/man1/mpicc.1
    /usr/local/share/man/man1/mpicxx.1
    /usr/local/share/man/man1/mpiexec.1
    /usr/local/share/man/man1/mpif77.1
    /usr/local/share/man/man1/mpif90.1
    /usr/local/share/man/man1/mpirun.1
    /usr/local/share/man/man1/ompi-clean.1
    /usr/local/share/man/man1/ompi-iof.1
    /usr/local/share/man/man1/ompi-probe.1
    /usr/local/share/man/man1/ompi-profiler.1
    /usr/local/share/man/man1/ompi-ps.1
    /usr/local/share/man/man1/ompi-server.1
    /usr/local/share/man/man1/ompi-top.1
    /usr/local/share/man/man1/ompi_info.1
    /usr/local/share/man/man7/ompi_crcp.7
    /usr/local/share/openmpi
    /usr/local/share/openmpi/amca-param-sets
    /usr/local/share/openmpi/amca-param-sets/example.conf
    /usr/local/share/openmpi/help-coll-sync.txt
    /usr/local/share/openmpi/help-dash-host.txt
    /usr/local/share/openmpi/help-ess-base.txt
    /usr/local/share/openmpi/help-hostfile.txt
    /usr/local/share/openmpi/help-mca-base.txt
    /usr/local/share/openmpi/help-mca-bml-r2.txt
    /usr/local/share/openmpi/help-mca-coll-base.txt
    /usr/local/share/openmpi/help-mca-op-base.txt
    /usr/local/share/openmpi/help-mca-param.txt
    /usr/local/share/openmpi/help-mpi-api.txt
    /usr/local/share/openmpi/help-mpi-btl-base.txt
    /usr/local/share/openmpi/help-mpi-btl-sm.txt
    /usr/local/share/openmpi/help-mpi-btl-tcp.txt
    /usr/local/share/openmpi/help-mpi-coll-sm.txt
    /usr/local/share/openmpi/help-mpi-common-sm.txt
    /usr/local/share/openmpi/help-mpi-errors.txt
    /usr/local/share/openmpi/help-mpi-pml-bfo.txt
    /usr/local/share/openmpi/help-mpi-pml-csum.txt
    /usr/local/share/openmpi/help-mpi-pml-ob1.txt
    /usr/local/share/openmpi/help-mpi-runtime.txt
    /usr/local/share/openmpi/help-mpool-base.txt
    /usr/local/share/openmpi/help-odls-default.txt
    /usr/local/share/openmpi/help-ompi-crcp-base.txt
    /usr/local/share/openmpi/help-ompi-dpm-base.txt
    /usr/local/share/openmpi/help-ompi-dpm-orte.txt
    /usr/local/share/openmpi/help-ompi-probe.txt
    /usr/local/share/openmpi/help-ompi-profiler.txt
    /usr/local/share/openmpi/help-ompi-pubsub-orte.txt
    /usr/local/share/openmpi/help-ompi-server.txt
    /usr/local/share/openmpi/help-ompi_info.txt
    /usr/local/share/openmpi/help-oob-tcp.txt
    /usr/local/share/openmpi/help-opal-carto-file.txt
    /usr/local/share/openmpi/help-opal-crs-base.txt
    /usr/local/share/openmpi/help-opal-crs-none.txt
    /usr/local/share/openmpi/help-opal-maffinity-hwloc.txt
    /usr/local/share/openmpi/help-opal-runtime.txt
    /usr/local/share/openmpi/help-opal-shmem-mmap.txt
    /usr/local/share/openmpi/help-opal-shmem-posix.txt
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    /usr/local/share/openmpi/help-orte-filem-rsh.txt
    /usr/local/share/openmpi/help-orte-iof.txt
    /usr/local/share/openmpi/help-orte-notifier-command.txt
    /usr/local/share/openmpi/help-orte-odls-base.txt
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    /usr/local/share/openmpi/help-orte-rmaps-base.txt
    /usr/local/share/openmpi/help-orte-rmaps-lb.txt
    /usr/local/share/openmpi/help-orte-rmaps-resilient.txt
    /usr/local/share/openmpi/help-orte-rmaps-rr.txt
    /usr/local/share/openmpi/help-orte-rmaps-seq.txt
    /usr/local/share/openmpi/help-orte-rmaps-topo.txt
    /usr/local/share/openmpi/help-orte-rmcast-udp.txt
    /usr/local/share/openmpi/help-orte-runtime.txt
    /usr/local/share/openmpi/help-orte-snapc-base.txt
    /usr/local/share/openmpi/help-orte-top.txt
    /usr/local/share/openmpi/help-orted.txt
    /usr/local/share/openmpi/help-orterun.txt
    /usr/local/share/openmpi/help-plm-base.txt
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    /usr/local/share/openmpi/help-plm-slurm.txt
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    /usr/local/share/openmpi/help-ras-slurm.txt
    /usr/local/share/openmpi/help-regex.txt
    /usr/local/share/openmpi/help-rmaps_rank_file.txt
    /usr/local/share/openmpi/help-rmcast-base.txt
    /usr/local/share/openmpi/mpic++-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpic++-wrapper-data.txt
    /usr/local/share/openmpi/mpicc-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpicc-wrapper-data.txt
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    /usr/local/share/openmpi/openmpi-valgrind.supp
    /usr/local/share/openmpi/ortec++-wrapper-data.txt
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    /usr/local/share/vampirtrace/doc/ChangeLog
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    /usr/local/share/vampirtrace/doc/opari/lacsi01.pdf
    /usr/local/share/vampirtrace/doc/opari/LICENSE
    /usr/local/share/vampirtrace/doc/opari/opari-logo-100.gif
    /usr/local/share/vampirtrace/doc/opari/Readme.html
    /usr/local/share/vampirtrace/doc/otf
    /usr/local/share/vampirtrace/doc/otf/ChangeLog
    /usr/local/share/vampirtrace/doc/otf/LICENSE
    /usr/local/share/vampirtrace/doc/otf/otfprofile.pdf
    /usr/local/share/vampirtrace/doc/otf/otfprofile_clustering.pdf
    /usr/local/share/vampirtrace/doc/otf/otftools.pdf
    /usr/local/share/vampirtrace/doc/otf/specification.pdf
    /usr/local/share/vampirtrace/doc/UserManual.html
    /usr/local/share/vampirtrace/doc/UserManual.pdf
    /usr/local/share/vampirtrace/doc/vtsetup
    /usr/local/share/vampirtrace/doc/vtsetup/ChangeLog
    /usr/local/share/vampirtrace/doc/vtsetup/LICENSE
    /usr/local/share/vampirtrace/FILTER.SPEC
    /usr/local/share/vampirtrace/GROUPS.SPEC
    /usr/local/share/vampirtrace/libtool
    /usr/local/share/vampirtrace/METRICS.SPEC
    /usr/local/share/vampirtrace/TAUINST.SPEC
    /usr/local/share/vampirtrace/vtc++-wrapper-data.txt
    /usr/local/share/vampirtrace/vtcc-wrapper-data.txt
    /usr/local/share/vampirtrace/vtcxx-wrapper-data.txt
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    /usr/local/share/vampirtrace/vtsetup-data.dtd
    /usr/local/share/vampirtrace/vtsetup-data.xml
    /usr/local/texlive/2011/bin/universal-darwin/teckit_compile
    /usr/local/texlive/2011/bin/x86_64-darwin/teckit_compile
    /usr/local/texlive/2011/texmf-dist/doc/generic/wsuipa/compilefonts
    /usr/local/texlive/2011/texmf-dist/doc/latex/apprends-latex/exemples/seraphin-lampion.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_1.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_2.jpg
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    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_4.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/bardiag/example/compile.all
    /usr/local/texlive/2011/texmf-dist/doc/latex/cmpica
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    /usr/local/texlive/2011/texmf-dist/doc/latex/oberdiek/stampinclude.pdf
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    /usr/local/texlive/2011/texmf-dist/doc/latex/tkz-fct/latex/TKZdoc-fct-compilation.tex
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    /usr/local/texlive/2011/texmf-dist/doc/latex/xmpincl/license.xmp
    /usr/local/texlive/2011/texmf-dist/doc/latex/xmpincl/README
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    /usr/local/texlive/2011/texmf-dist/doc/metapost/base/source-tutorial/mpintro.bib
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    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/pcpunct.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/pica.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/ibygrk/sampi4.mf
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica/cmpica.tfm
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica/cmpicab.tfm
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica/cmpicati.tfm
    /usr/local/texlive/2011/texmf-dist/source/latex/oberdiek/stampinclude.dtx
    /usr/local/texlive/2011/texmf-dist/source/latex/prosper/compilation.fig
    /usr/local/texlive/2011/texmf-dist/source/latex/xmpincl
    /usr/local/texlive/2011/texmf-dist/source/latex/xmpincl/xmpincl.dtx
    /usr/local/texlive/2011/texmf-dist/source/latex/xmpincl/xmpincl.ins
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    /usr/local/texlive/2011/texmf-dist/tex/latex/prosper/compilation.eps
    /usr/local/texlive/2011/texmf-dist/tex/latex/xmpincl
    /usr/local/texlive/2011/texmf-dist/tex/latex/xmpincl/xmpincl.sty
    /usr/local/texlive/2011/tlpkg/texworks/Lib/sre_compile.pyc
    /usr/local/texlive/2011/tlpkg/texworks/texworks-help/TeXworks-manual/en/CompilingTw.html
    /usr/local/texlive/2011/tlpkg/tlpobj/cmpica.tlpobj
    /usr/local/texlive/2011/tlpkg/tlpobj/xmpincl.tlpobj

    Comment


    • #17
      You are compiling with /usr/bin/mpicxx, but you are probably not linking with the related library.

      This information will be provided by


      Code:
      echo $LD_LIBRARY_PATH
      Code:
      /usr/bin/mpiexec --version
      Code:
      /usr/local/bin/mpiexec --version
      We are closing in on the problem.

      Originally posted by Saratoga View Post
      Hi again,

      I got this,


      echo $PATH
      /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin
      echo $LD_LIBRARY_PATH

      type mpiexec
      mpiexec is /usr/bin/mpiexec

      type mpicxx
      mpicxx is /usr/bin/mpicxx

      type ompi_info
      ompi_info is /usr/bin/ompi_info

      find /usr/local|grep mpi
      /usr/local/bin/mpic++
      /usr/local/bin/mpic++-vt
      /usr/local/bin/mpicc
      /usr/local/bin/mpicc-vt
      /usr/local/bin/mpicxx
      /usr/local/bin/mpicxx-vt
      /usr/local/bin/mpiexec
      /usr/local/bin/mpif77
      /usr/local/bin/mpif77-vt
      /usr/local/bin/mpif90
      /usr/local/bin/mpif90-vt
      /usr/local/bin/mpirun
      /usr/local/bin/ompi-clean
      /usr/local/bin/ompi-iof
      /usr/local/bin/ompi-probe
      /usr/local/bin/ompi-profiler
      /usr/local/bin/ompi-ps
      /usr/local/bin/ompi-server
      /usr/local/bin/ompi-top
      /usr/local/bin/ompi_info
      /usr/local/bin/otfmerge-mpi
      /usr/local/bin/otfprofile-mpi
      /usr/local/bin/vtfilter-mpi
      /usr/local/bin/vtfiltergen-mpi
      /usr/local/bin/vtunify-mpi

      Comment


      • #18
        Hi again Sebastian,

        I think you found the problem.

        I have both 1.2.8 and 1.6 versions

        echo $LD_LIBRARY_PATH

        /usr/bin/mpiexec --version
        mpiexec (OpenRTE) 1.2.8

        Report bugs to http://www.open-mpi.org/community/help/

        /usr/local/bin/mpiexec --version
        mpiexec (OpenRTE) 1.6

        Report bugs to http://www.open-mpi.org/community/help/

        Thanks for you enormous help

        Comment


        • #19
          OK good luck with that.



          Originally posted by Saratoga View Post
          Hi again Sebastian,

          I think you found the problem.

          I have both 1.2.8 and 1.6 versions

          echo $LD_LIBRARY_PATH

          /usr/bin/mpiexec --version
          mpiexec (OpenRTE) 1.2.8

          Report bugs to http://www.open-mpi.org/community/help/

          /usr/local/bin/mpiexec --version
          mpiexec (OpenRTE) 1.6

          Report bugs to http://www.open-mpi.org/community/help/

          Thanks for you enormous help

          Comment

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