Yes, after the initial question, I still need help. I am working in Linux koala and need help building simple files. For instance, i cannot name a path correctly:
home$ bowtie -f -v 0 -m 1 flymetothemoon -f /home/lilithdog/bin will return a message saying there are no readable files in /home/lilithdog/bin.
This is exactly what is happening:
:~/bin/indexes$ bowtie -f -v0 -m1 flymetothemoon -f /home/angela/bin/
Warning: Could not find any reads in "/home/angela/bin/"
# reads processed: 0
# reads with at least one reported alignment: 0 (0.00%)
# reads that failed to align: 0 (0.00%)
No alignments
home$ bowtie -f -v 0 -m 1 flymetothemoon -f /home/lilithdog/bin will return a message saying there are no readable files in /home/lilithdog/bin.
This is exactly what is happening:
:~/bin/indexes$ bowtie -f -v0 -m1 flymetothemoon -f /home/angela/bin/
Warning: Could not find any reads in "/home/angela/bin/"
# reads processed: 0
# reads with at least one reported alignment: 0 (0.00%)
# reads that failed to align: 0 (0.00%)
No alignments
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