Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Orthomcl problems

    I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

    DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

    I am not sure what to do.

    Thanks!

  • #2
    Did you follow the directions in the user guide to install/configure program/database etc?

    The error above seems to indicate that you either did not create that table or called it something else.

    Comment


    • #3
      Solved

      Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

      Thanks again!

      Comment


      • #4
        Hi
        Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

        Thanks !!

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Recent Advances in Sequencing Analysis Tools
          by seqadmin


          The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
          05-06-2024, 07:48 AM
        • seqadmin
          Essential Discoveries and Tools in Epitranscriptomics
          by seqadmin




          The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
          04-22-2024, 07:01 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, 05-07-2024, 06:57 AM
        0 responses
        12 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 05-06-2024, 07:17 AM
        0 responses
        16 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 05-02-2024, 08:06 AM
        0 responses
        21 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 04-30-2024, 12:17 PM
        0 responses
        24 views
        0 likes
        Last Post seqadmin  
        Working...
        X