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Old 08-04-2011, 10:38 AM   #1
polsum
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Default Differential Expression analysis without replicates

Hi, I would like to know the best statistical method or program to perform differential expression analysis of solexa/illumina based deep sequenced reads between two samples.

Does anyone has an insight into this?

Any help would be greatly appreciated.

thanks in advance.
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Old 08-05-2011, 03:40 AM   #2
mudshark
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http://seqanswers.com/forums/showthread.php?t=7068

anyway: without biological replication the results will be - biologically - rather irrelevant. http://en.wikipedia.org/wiki/Design_of_experiments

Last edited by mudshark; 08-05-2011 at 06:08 AM.
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